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Issue on a default Fedora installation.Education, training, didactic techniques, molecular viewer, molecular structure INTRODUCTION Remove the file %USERPROFILE%\.pymol\winfiletypes_done.txt (fixed in PyMOL 2.3.1) On Linux: ImportError: libnsl.so.1 Remove the file ~/.pymolpluginsrc.py (fixed in PyMOL 2.3.1) On Windows: UnicodeDecodeError on startup APBS Tools2.1) can't be moved or resizedįixed in 2.4.0, please download the new invalid syntax error on startup With pyqt>=5.9 you need to launch PyMOL with pymol -S On Windows, some “legacy” plugin windows (e.g. Set the precomputed_lighting setting (fixed in PyMOL 2.3.0) Quad-buffered stereo not auto-detected on Linuxįixed in 2.1.0, please download the new version.Īlso make sure your conda environment has pyqt=5.6 (not 5.9). The on-demand installation of ffmpeg may install an incompatible version (Error message: dyld: Library not loaded: This can be fixed by running the following command in a terminal: /Applications/PyMOL.app/Contents/bin/conda install conda-forge::ffmpeg On Windows with Intel Graphics: Colors are faded ( issue #15)

#Pymol tutorial 10 answers movie

Remove all relevant dependencies or create a new environment and:Ĭonda install -c schrodinger -c conda-forge pymol-bundle On macOS: Movie export with ffmpeg broken All dependencies, including python, are based off of conda-forge. Known Issues Previous conda installation workflow not compatible with PyMOL 2.5įor PyMOL 2.5: Transition from previous versions may not work. Yes, use the pse_export_version setting (please let us know if you experience issues with Python 3). Can PyMOL 2.0 export Session Files for PyMOL 1.x? But if you miss a Python package, it's very likely available from Anaconda Cloud! All our bundles are based on the Anaconda Python distribution and ship with the conda package manager. Please upgrade to PyMOL 2.1 (see driver installation instructions) Will PyMOL also work with other Python installations (system Python, Homebrew, MacPorts, etc.)? 3Dconnexion Space Navigator does not work Where is AxPyMOL 2.0+?ĪxPyMOL 2.5.0 is now available. Save it on your workstation and then navigate to it when PyMOL prompts you for a license.

On Linux: $HOME/anaconda3/share/pymol/license.lic What do I do with my new license file?ĭon't open it.

Or: /Library/Application Support/Schrodinger/licenses/*.lic ( gatekeeper-friendly, since PyMOL 2.2.2)

On macOS: /Applications/PyMOL.app/Contents/share/pymol/license.lic (not gatekeeper-friendly).

On Windows: C:\ProgramData\PyMOL\share\pymol\license.lic.

Yes, the license file can be placed at $PREFIX/share/pymol/license.lic, for example:

Can the license file be installed globally instead of per user?

#Pymol tutorial 10 answers how to

Save it on your workstation and then navigate to it when PyMOL prompts you for a license.įrequently Asked Questions How to do silent installation on Windows?

Hint: Conda works great with isolated environments.

More informationĬonda install -c schrodinger -c conda-forge pymol

For PyMOL 2.5: Transition from previous versions may not work.

ZIP Archive: Unzip and run PyMOLWin.exe (does not create start menu entries).

Start /wait "" PyMOL-2.3.4_0-Windows-x86_64.exe /InstallationType=AllUsers /S /D=C:\Programs\PyMOL

Non-interactive (alternative): Equivalent to Miniconda installer.

#Pymol tutorial 10 answers .exe

exe installer and follow the setup wizard